See the Export column of the Bio-Formats list of supported formats for an up-to-date list of formats which can be exported. As of this writing, the supported file types are: This uses the information in an active results window and exports it into a text file.įiles may also be exported to many file types using Plugins › Bio-Formats › Bio-Formats Exporter. This option is similar to " Save as/Selection.", but this choice saves the coordinates of the selection in a text file with two columns for X and Y coordinates. Once the ROI is deselected, it can be restored at any time in the same location by opening the saved ROI. After drawing an ROI onto an image, the selection's coordinates can be saved using this option. You will be presented with the option to either name the images numerically or with the slice labels. This option saves each slice in a stack as a separate TIF file. Their procedures are all straightforward. Other options for saving and exporting image files are shown in the Fiji Save As menu. The frame-rate will then be determined by Flash, not the AVI movie file. Though uncompressed files are large, they should be playable on any PC/Mac without decoder issues.įlash MX will import uncompressed AVI files. The compression may be in JPEG, PNG, or uncompressed. Frame rate can be between 0.1 and 100 frames per second (fps). The frame rate and compression option of the exported AVI movie is selected in the resulting window. For users - Fiji is easy to install and has an automatic update function, bundles a lot of plugins and offers comprehensive documentation. Uncompressed AVI files are exported via “ File/Save as…/AVI…”. Fiji is an image processing packagea batteries-included distribution of ImageJ2, bundling a lot of plugins which facilitate scientific image analysis. A more suitable option would be saving as GIF, where the only limitation is that any RGB color stacks must be converted to 8 bit color. It is only compatible on RGB or 8 bit images. When the “ Save as” dialog is opened, Fiji will enter the image window’s name, plus the appropriate file suffix, as the “File Name".Īnimated GIF… Choosing this option from the " Save as" menu saves a stack as an animated GIF. Other formats are available (see menu image on the right) and can be accessed by “ File/Save As.”. class file which saves compilation time for posterior calls, that function in fiji just says that it is not supported. Error creating thumbnail: Unable to save thumbnail to destinationThe “ File/Save” (hotkey: S) menu command will save the image as a TIF file. I am an ImageJ plugin developer and I am trying to move to Fiji, so i have some questions: In ImageJ there is a Compile and Run command that creates the precompiled.
0 Comments
Leave a Reply. |
AuthorWrite something about yourself. No need to be fancy, just an overview. ArchivesCategories |